Visualize
Blast
Instructions
interactive genome visualization of Scomber colias
BLAST
Alignment Program:
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 Frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database:
Scomber colias Draft Genome
Scomber colias Genes
Scomber colias mRNA
Scomber colias Proteins
Scomber colias Transcripts
FASTA query sequence:
Load query from file:
Options
E value:
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments:
25
1
5
50
100
Word size:
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix:
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment:
True
False
Filtering:
On
Off
